Structure of PDB 8ekk Chain D

Receptor sequence
>8ekkD (length=533) Species: 645463 (Clostridioides difficile R20291) [Search protein sequence]
EDLDTDNDNIPDSYERNGYTIKDLIAVKWEDSFAEQGYKKYVSNYLESNT
AGDPYTDYEKASGSFDKAIKTEARDPLVAAYPIVGVGMEKLIISTNEHAS
TDQGKTVSRATAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMY
KVTPTTNLVLDGDTLSTIKAQENQIGNNLSPGDTYPKKGLSPLALNTMDQ
FSSRLIPINYDQLKKLDAGKQIKLETTQVSGNFGTKNSSGQIVTEGNSWS
DYISQIDSISASIILDTENESYERRVTAKNLQDPEDKTPELTIGEAIEKA
FGATKKDGLLYFNDIPIDESCVELIFDDNTANKIKDSLKTLSDKKIYNVK
LERGMNILIKTPTYFTNFDDYNNYPSTIPMSELKPYKRYVFSGYSGYTKF
SYEFETTENLSITELNSVKIPTDQEIMDAHKIYFADLNTYINGMYFAPTQ
TNKEALDYIQKYRVEATLQYSGFKDIGTKDKEMRNYLGDPNQPKTNYVNL
RSYFTGGENIMTYKKLRIYAITPDDRELLVLSV
3D structure
PDB8ekk Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
ChainD
Resolution3.28 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA D D222 D224 E231 N260 E263 D273 D6 D8 E15 N44 E47 D57
BS02 CA D D220 D222 D224 I226 E231 D4 D6 D8 I10 E15
Gene Ontology
Biological Process
GO:0051260 protein homooligomerization
Cellular Component
GO:0005576 extracellular region

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Biological Process
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Cellular Component
External links
PDB RCSB:8ekk, PDBe:8ekk, PDBj:8ekk
PDBsum8ekk
PubMed
UniProtA0A9R0BM17

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