Structure of PDB 8efy Chain D

Receptor sequence
>8efyD (length=309) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH
VIAHELGVNLRVTSGPAIPGDLAAILANSLEEGDILFIDEIHRLSRQAEE
HLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR
FGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAK
RLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLIL
RFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVATELA
YRHLGYPPP
3D structure
PDB8efy Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate
ChainD
Resolution3.16 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D V265 G266 R300 R302 V257 G258 R292 R294
BS02 AGS D P8 Y14 I15 P47 G48 L49 G50 K51 T53 P2 Y8 I9 P41 G42 L43 G44 K45 T47
Gene Ontology
Molecular Function
GO:0000400 four-way junction DNA binding
GO:0003677 DNA binding
GO:0005524 ATP binding
GO:0009378 four-way junction helicase activity
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0032508 DNA duplex unwinding
Cellular Component
GO:0005737 cytoplasm
GO:0048476 Holliday junction resolvase complex

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Cellular Component
External links
PDB RCSB:8efy, PDBe:8efy, PDBj:8efy
PDBsum8efy
PubMed
UniProtQ5SL87|RUVB_THET8 Holliday junction branch migration complex subunit RuvB (Gene Name=ruvB)

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