Structure of PDB 8dqi Chain D

Receptor sequence
>8dqiD (length=274) Species: 1291540 (Methanomethylophilus alvi) [Search protein sequence]
GTVKYTDAQIQRLREYGNGTYEQKVFEDLASRDAAFSKEMSVASTDNEKK
IKGMIANPSRHGLTQLMNDIADALVAEGFIEVRTPIFISKDALARMTITE
DKPLFKQVFWIDEKRALRPMLAPNLYSVMRDLRDHTDGPVKIFEMGSCFR
KESSGMHLEEFTMLALGDMGPRGDATEVLKNYISVVMKAAGLPDYDLVQE
ESDVYKETIDVEINGQEVCSAAVGPHYLDAAHDVHEPCSGAGFGLERLLT
IREKYSTVKKGGASISYLNGAKIN
3D structure
PDB8dqi Structures of Methanomethylophilus alvus Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity.
ChainD
Resolution1.54 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP D R150 E152 H158 L159 F162 E218 V219 C220 S221 G243 G245 R248 R150 E152 H157 L158 F161 E217 V218 C219 S220 G242 G244 R247
BS02 T7Q D M120 A122 L125 M129 Y206 S221 S240 G241 A242 G243 M120 A122 L125 M129 Y205 S220 S239 G240 A241 G242
BS03 MG D E218 S221 E217 S220
Gene Ontology
Molecular Function
GO:0004812 aminoacyl-tRNA ligase activity
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8dqi, PDBe:8dqi, PDBj:8dqi
PDBsum8dqi
PubMed36395426
UniProtA0A3G3IHP7

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