Structure of PDB 8dow Chain D

Receptor sequence

>8dowD (length=217) Species: 9544 (Macaca mulatta) [Search protein sequence]

YVVMTQSPLSLPITPGQPASISCRSSQRLLHSDGNTYLAWYQQRPGQPPR
RLIYEVSKLDSGVPDRFSGSGAGTDFTLKISRVEAEDVGVYYCGQNTYLP
YSFGQGSKVEIKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREAS
VKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACE
VTHQGLSSPVTKSFNRG

3D structure

PDB

8dow Shared recognition mechanism for HIV-1 envelope-reactive V3 glycan broadly neutralizing B cell lineage maturation in humans and macaques

Chain

Resolution

3.69 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MAN	D	Y54 E55	Y54 E55
BS02	MAN	D	R51 Y54 D60 S61	R51 Y54 D60 S61

External links

PDB	RCSB:8dow, PDBe:8dow, PDBj:8dow
PDBsum	8dow
PubMed

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