Structure of PDB 8cqd Chain D

Receptor sequence
>8cqdD (length=242) Species: 86473 (uncultured Gammaproteobacteria bacterium) [Search protein sequence]
MGKLLLILGSVIALPTFLAGGGDLDASDYTGVSFWLVTAALLASTVFFFV
ERDRVSAKWKTSLTVSGLVTGIAFWHYMYMRGVWIETGDSPTVFRYIDWL
LTVPLLICEFYLILAAATNVAGSLFKKLLVGSLVMLVFGYMGEAGIMAAW
PAFIIGCLAWVYMIYELWAGEGKSACNTASPAVQSAYNTMMYIIIFGWAI
YPVGYFTGYLNLNLIYNLADFVNKILFGLIIWNVAVKESSNA
3D structure
PDB8cqd Structural insights into proteorhodopsin biogenesis and retinal scavenging
ChainD
Resolution3.54 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RET D W99 M135 G156 Y201 Y205 K232 W99 M135 G156 Y201 Y205 K224
External links
PDB RCSB:8cqd, PDBe:8cqd, PDBj:8cqd
PDBsum8cqd
PubMed39138159
UniProtQ6J4G7|PRRG_UNKP Green-light absorbing proteorhodopsin

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