Structure of PDB 8cqc Chain D

Receptor sequence
>8cqcD (length=217) Species: 86473 (uncultured Gammaproteobacteria bacterium) [Search protein sequence]
DASDYTGVSFWLVTAALLASTVFFFVERDRVSAKWKTSLTVSGLVTGIAF
WHYMYMRGVWIETGDSPTVFRYIDWLLTVPLLICEFYLILAAATNVAGSL
FKKLLVGSLVMLVFGYMGEAGIMAAWPAFIIGCLAWVYMIYELWAGEGKS
ACNTASPAVQSAYNTMMYIIIFGWAIYPVGYFTGYLNLNLIYNLADFVNK
ILFGLIIWNVAVKESSN
3D structure
PDB8cqc Structural insights into proteorhodopsin biogenesis and retinal scavenging
ChainD
Resolution2.82 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 RET D Y96 W99 V103 M135 G139 G156 W198 Y201 K232 Y72 W75 V79 M111 G115 G132 W174 Y177 K200
External links
PDB RCSB:8cqc, PDBe:8cqc, PDBj:8cqc
PDBsum8cqc
PubMed39138159
UniProtQ6J4G7|PRRG_UNKP Green-light absorbing proteorhodopsin

[Back to BioLiP]