Structure of PDB 8cm5 Chain D

Receptor sequence

>8cm5D (length=214) Species: 882 (Nitratidesulfovibrio vulgaris str. Hildenborough) [Search protein sequence]

GKMFFVDLSRCTACRGCQIACKQWKNLPAEETRNTGSHQNPPDLSYVTLK
TVRFTEKSRKGPGIDWLFFPEQCRHCVEPPCKGQADVDLEGAVVKDETTG
AVLFTELTAKVDGESVRSACPYDIPRIDPVTKRLSKCDMCNDRVQNGLLP
ACVKTCPTGTMNFGDEQEMLALAEKRLAEVKKTYPGAVLGDPNDVRVVYL
FTRDPKDFYEHAVA

3D structure

PDB

8cm5 W-formate dehydrogenase C872A from Desulfovibrio vulgaris - with Formamide

Chain

Resolution

2.15 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	SF4	D	C12 T13 A14 C15 R16 C18 C157 P158 T159 T161 M162	C11 T12 A13 C14 R15 C17 C156 P157 T158 T160 M161
BS02	SF4	D	C74 R75 H76 C77 P80 C82 V103 C121 P126 K137	C73 R74 H75 C76 P79 C81 V102 C120 P125 K136
BS03	SF4	D	F5 C22 K26 K51 C138 D139 M140 C141 C153	F4 C21 K25 K50 C137 D138 M139 C140 C152

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding
GO:0051539	4 iron, 4 sulfur cluster binding

View graph for
Molecular Function

External links

PDB	RCSB:8cm5, PDBe:8cm5, PDBj:8cm5
PDBsum	8cm5
PubMed	37985883
UniProt	Q72EJ0

[Back to BioLiP]