Structure of PDB 8cbs Chain D

Receptor sequence
>8cbsD (length=144) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence]
CSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLA
GRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGGVIESMNKELKKIIG
QVRDQAEHLKTAVQMAVFIHNKKRKGYSAGERIVDIIATDIQTK
3D structure
PDB8cbs Biological and Structural Analyses of New Potent Allosteric Inhibitors of HIV-1 Integrase.
ChainD
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.-
2.7.7.49: RNA-directed DNA polymerase.
2.7.7.7: DNA-directed DNA polymerase.
3.1.-.-
3.1.13.2: exoribonuclease H.
3.1.26.13: retroviral ribonuclease H.
3.4.23.16: HIV-1 retropepsin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 U5L D Q95 L102 T125 A129 W132 Q40 L47 T70 A74 W77
BS02 U5L D A169 E170 H171 T174 M178 A106 E107 H108 T111 M115
BS03 MG D D64 D116 D9 D61
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
Biological Process
GO:0015074 DNA integration

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Molecular Function
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Biological Process
External links
PDB RCSB:8cbs, PDBe:8cbs, PDBj:8cbs
PDBsum8cbs
PubMed37310224
UniProtP12497|POL_HV1N5 Gag-Pol polyprotein (Gene Name=gag-pol)

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