Structure of PDB 8bp8 Chain D

Receptor sequence
>8bp8D (length=262) Species: 28875 (Rotavirus A) [Search protein sequence]
LPITGSMDIAYALTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTG
SVYFKEYTNIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWL
CNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDATT
FEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVG
GSDILDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVDQIIQVMSKRS
RSLNSAAFYYRV
3D structure
PDB8bp8 Characterization of the rotavirus assembly pathway in situ using cryoelectron tomography.
ChainD
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA D D151 E154 E222 L224 D87 E90 E158 L160
BS02 CA D Q177 D228 V229 D231 Q113 D164 V165 D167
BS03 CA D G206 T214 E216 G142 T150 E152
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0016020 membrane
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:8bp8, PDBe:8bp8, PDBj:8bp8
PDBsum8bp8
PubMed36996819
UniProtA0A1Q2TSM6

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