Structure of PDB 8bgh Chain D

Receptor sequence
>8bghD (length=177) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR
3D structure
PDB8bgh Modulation of translational decoding by m 6 A modification of mRNA.
ChainD
Resolution2.88 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D N37 G41 R71 F77 I85 K88 S121 D123 G151 L152 D153 N36 G40 R70 F76 I84 K87 S120 D122 G150 L151 D152
BS02 rna D S24 M26 Q63 K64 L66 K69 T90 R92 S23 M25 Q62 K63 L65 K68 T89 R91
BS03 rna D A75 R80 A74 R79
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:8bgh, PDBe:8bgh, PDBj:8bgh
PDBsum8bgh
PubMed37553384
UniProtP62399|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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