Structure of PDB 8a98 Chain D

Receptor sequence
>8a98D (length=159) Species: 347515 (Leishmania major strain Friedlin) [Search protein sequence]
ANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARRNEK
IAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGI
KYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFE
KVHDGIIFQ
3D structure
PDB8a98 CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANT
ChainD
Resolution2.46 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D K18 S50 H70 N97 A99 D100 G126 D128 Y130 R149 K11 S43 H54 N81 A83 D84 G110 D112 Y114 R133
BS02 rna D M11 Q45 T46 T72 R74 R136 G137 R139 R143 K144 H154 M4 Q38 T39 T56 R58 R120 G121 R123 R127 K128 H138
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:8a98, PDBe:8a98, PDBj:8a98
PDBsum8a98
PubMed38722744
UniProtP48157|RL11_LEIMA Large ribosomal subunit protein uL5 (Gene Name=RPL11)

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