Structure of PDB 7zz8 Chain D

Receptor sequence

>7zz8D (length=1058) Species: 1358 (Lactococcus lactis)

SHMKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESY
LIGQGKKPIDAYLDIDDIIRVALESGADAIHPGYGLLSENLEFATKVRAA
GLVFVGPELHHLDIFGDKIKAKAAADEAKVPGIPGTNGAVDIDGALEFAK
TYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIGAFGSGEIYV
EKYIENPKHIEVQILGDRHGNIIHLHERDCSVQRRNQKVIEIAPAVGLSP
DFRNEICEAAVKLCKNVGYVNAGTVEFLVKDDKFYFIEVNPRVQVEHTIT
ELITGVDIVQAQILIAQGKDLHREIGLPAQSEIPLLGSAIQCRITTEDPQ
NGFLPDTGKIDTYRSPGGFGIRLDVGNAYAGYEVTPYFDSLLVKVCTFAN
EFSDSVRKMDRVLHEFRIRGVKTNIPFLINVIANENFTSGQATTTFIDNT
PSLFNFPRLRDRGTKTLHYLSMITVNGFPGIENTEKRHFEEPRQPLLNLE
KKKTAKNILDEQGADAVVDYVKNTKEVLLTDTTLRDAHQSLLATRLRLQD
MKGIAQAIDQGLPELFSAEMWGGATFDVAYRFLNESPWYRLRKLRKLMPN
TMFQMLFRGSNAVGYQNYPDNVIEEFIRVAAHEGIDVFRIFDSLNWLPQM
EKSIQAVRDNGKIAEATICYTGDILDPSRPKYNIQYYKDLAKELEATGAH
ILAVKDMAGLLKPQAAYRLISELKDTVDLPIHLHTHDTSGNGIITYSGAT
QAGVDIIDVATASLAGGTSQPSMQSIYYALEHGPRHASINVKNAEQIDHY
WEDVRKYYAPFEAGITSPQTEVYMHEMPGGQYTNLKSQAAAVGLGHRFDE
IKQMYRKVNMMFGDIIKVTPSSKVVGDMALFMIQNDLTEEDVYARGNELN
FPESVVSFFRGDLGQPVGGFPEKLQKIIVKDKAVITDRPGLHAEKVDFET
VKADLEQKIGYEPGDHEVISYIMYPQVFLDYQKMQREFGAVTLLDTPTFL
HGMRLNEKIEVQIEKGKTLSIRLDEIGEPDLAGNRVLFFNLNGQRREVVI
NDQSVQAQ

3D structure

• PDB: 7zz8 CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase.
• Chain: D
• Resolution: 3.29 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	2BA	D	Q712 Y715 S745 G746 Q749	Q714 Y717 S747 G748 Q751
BS02	ACO	D	R18 N21 K43 A44	R20 N23 K45 A46
BS03	MN	D	D534 K703 H732 H734	D536 K705 H734 H736
BS04	ADP	D	M155 K157 G163 G164 M167 Y201 I202 H207 Q231 L276 E286 T442	M157 K159 G165 G166 M169 Y203 I204 H209 Q233 L278 E288 T444
BS05	MG	D	E274 E286	E276 E288
BS06	ACO	D	H412 E413 R415 R417 R458 R460 K1015 T1016 L1017 R1044	H414 E415 R417 R419 R460 R462 K1017 T1018 L1019 R1046
BS07	PYR	D	Q537 L604 V866 T867	Q539 L606 V868 T869

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Nov 24 10:55:17 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7zz8', asym_id = 'D', title = 'CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7zz8', asym_id='D', title='CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003824,0004736,0005524,0006090,0006094,0046872', uniprot = '', pdbid = '7zz8', asym_id = 'D'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004736,0005524,0006090,0006094,0046872', uniprot='', pdbid='7zz8', asym_id='D')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>