Structure of PDB 7yzo Chain D

Receptor sequence
>7yzoD (length=374) Species: 562 (Escherichia coli) [Search protein sequence]
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAI
CLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNR
ARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS
MLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTEL
TQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYL
LQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH
KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER
IPVQIKVKKINGLGYSKLESTFAV
3D structure
PDB7yzo Structural mechanism of endonucleolytic processing of blocked DNA ends and hairpins by Mre11-Rad50.
ChainD
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D S65 K128 K130 K194 S889 K890 S65 K128 K130 K194 S216 K217
BS02 dna D N108 Q110 N108 Q110
BS03 ADP D R946 T950 S952 E955 R273 T277 S279 E282
BS04 ADP D N12 S13 G40 G42 K43 T44 T45 R60 M72 N12 S13 G40 G42 K43 T44 T45 R60 M72
BS05 MG D T44 Q155 T44 Q155
Gene Ontology
Molecular Function
GO:0000014 single-stranded DNA endodeoxyribonuclease activity
GO:0004519 endonuclease activity
GO:0004527 exonuclease activity
GO:0004529 DNA exonuclease activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008296 3'-5'-DNA exonuclease activity
GO:0016887 ATP hydrolysis activity
GO:1990238 double-stranded DNA endonuclease activity
Biological Process
GO:0006260 DNA replication
GO:0006274 DNA replication termination
GO:0006281 DNA repair
GO:0006302 double-strand break repair
GO:0006310 DNA recombination
Cellular Component
GO:1990391 DNA repair complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7yzo, PDBe:7yzo, PDBj:7yzo
PDBsum7yzo
PubMed35987200
UniProtP13458|SBCC_ECOLI Nuclease SbcCD subunit C (Gene Name=sbcC)

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