Structure of PDB 7ywv Chain D

Receptor sequence
>7ywvD (length=524) Species: 101510 (Rhodococcus jostii RHA1) [Search protein sequence]
RTLPPGVSDERFDAALQRFRDVVGDKWVLSTADELEAFRDPYPVGAAEAN
LPSAVVSPESTEQVQDIVRIANEYGIPLHPVSTGKNNGYGGAAPRLSGSV
IVKTGERMNRILEVNEKYGYALLEPGVTYFDLYEYLQSHDSGLMLDCPEL
GWGSVVGNTLDRGVGYTPYGDHFMWQTGLEVVLPQGEVMRTGMGALPGSD
AWQLFPYGFGPFPDGMFTQSNLGIVTKMGIALMQRPPASQSFLITFDKEE
DLEQIVDIMLPLRINMAPLQNVPVLRNIFMDAAAVSKRTEWFDGDGPMPA
EAIERMKKDLDLGFWNFYGTLYGPPPLIEMYYGMIKEAFGKIPGARFFTH
EERDDRGGHVLQDRHKINNGIPSLDELQLLDWVPNGGHIGFVPVSAPDGR
EAMKQFEMVRNRANEYNKDYMASFIIGLREMYHVCLFIYDTADPEAREEI
LQMTKVLVREAAEAGYGEYRTHNALMDDVMATFNWGDGALLKFHEKIKDA
LDPNGIIAPGKSGIWPQRFRGQNL
3D structure
PDB7ywv Structure- and computational-aided engineering of an oxidase to produce isoeugenol from a lignin-derived compound.
ChainD
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.1.3.38: vanillyl-alcohol oxidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD D P82 S84 T85 G86 K87 N88 N89 P150 E151 G155 S156 G159 N160 L162 G165 V166 Y168 V227 H390 R472 P80 S82 T83 G84 K85 N86 N87 P148 E149 G153 S154 G157 N158 L160 G163 V164 Y166 V225 H388 R470
BS02 EOL D Y91 E151 V436 Y471 Y89 E149 V434 Y469
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003824 catalytic activity
GO:0004458 D-lactate dehydrogenase (cytochrome) activity
GO:0008720 D-lactate dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0018465 vanillyl-alcohol oxidase activity
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
GO:0071949 FAD binding
Biological Process
GO:1903457 lactate catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:7ywv, PDBe:7ywv, PDBj:7ywv
PDBsum7ywv
PubMed36418310
UniProtQ0SBK1

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