Structure of PDB 7ye1 Chain D

Receptor sequence
>7ye1D (length=1144) Species: 565050 (Caulobacter vibrioides NA1000) [Search protein sequence]
TFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPT
KDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIW
FLKSLPSRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDY
MRAQEEYGDDSFTAEIGAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQ
KKFSKRLKILEAFQESGNRPEWMVLTVVPVIPPELRPLVPLDGGRFATSD
LNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDNGRRGR
VITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLH
ECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEE
VIREHPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGD
QMAVHVPLSLEAQLEARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLS
VARDGEPGEGKIFADLGEIEAAMDAGVVSLHAKIKARHTEMTPEGVLLRK
VIDTTPGRMKIAALLPHHPQIGHRLIEKALTKKEIGNLIDIVYRHCGQKA
TVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRKLAEEYEQ
QYITKGEKYNKVVDAWAKATDRVADEMMAELQMKHKDENGREKEINAIYM
MAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRA
VVEGGDVLVSLGSRVLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEA
AVVQSVKVRSVLTCEAKIGVCGACYGRDLARGTPVNIGEAVGVIAAQSIG
EPGTQLTTGGLPRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKI
TPDKHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEV
YRLQGVPINDKHIETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQE
KAIARGGRPAVTQPVLLGITKASLQTKSFISAASFQETTRVLTEASVHGK
TDTLEGLKENVIVGRLIPAGTGSYLRSLQRVAAKRDEQLAQQRE
3D structure
PDB7ye1 Cryo-EM structures of Caulobacter crescentus transcription activation complex with an essential cell cycle regulator GcrA
ChainD
Resolution3.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D Y47 E1137 R1139 K1307 Y31 E919 R921 K1071
BS02 dna D A321 Y791 A305 Y771
BS03 MG D D462 D464 D466 D446 D448 D450
BS04 ZN D L72 C86 C89 L56 C70 C73
BS05 ZN D C810 C884 C894 C790 C864 C874
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ye1, PDBe:7ye1, PDBj:7ye1
PDBsum7ye1
PubMed
UniProtA0A0H3C4W8

[Back to BioLiP]