Structure of PDB 7tve Chain D

Receptor sequence
>7tveD (length=445) Species: 580240 (Saccharomyces cerevisiae W303) [Search protein sequence]
EESPSGYIKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITI
GLGAKASETNRGSSLKDLIREGCYSAKIILHLDNSKYGAYQQGIFGNEII
VERIIKRDGPASFSLRSENGKEISNKKKDIQTVVDYFSVPVSNPMCFLSQ
DAARSFLTASTSQDKYSHFMKGTLLQEITENLLYASAIHDSAQENMALHL
ENLKSLKAEYEDAKKLLRELNQTSDLNERKMLLQAKSLDTQEEIKRELDK
VSRMIQKAEKSLGLSQEEVIALFEKCRNKYKEGQKKYMEIDEALNRLHNS
LKARDQNYKNAEKGTCFDADMDFRASLKVRKFSGNLSFIKDTKSLEIYIL
TTNDEKARNVDTLSGGEKSFSQMALLLATWKPMRSRIIALDQFDVFMDQV
NRKIGTTLIVKKLKDIARTQTIIITPQDIGKIADIDSSGVSIHRM
3D structure
PDB7tve Cryo-EM structure of DNA-bound Smc5/6 reveals DNA clamping enabled by multi-subunit conformational changes.
ChainD
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D K129 S138 F187 K55 S64 F113
BS02 ATP D R1014 S1020 G1021 E1023 R358 S364 G365 E367
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003684 damaged DNA binding
GO:0003697 single-stranded DNA binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0019789 SUMO transferase activity
Biological Process
GO:0000724 double-strand break repair via homologous recombination
GO:0006281 DNA repair
GO:0006302 double-strand break repair
GO:0006310 DNA recombination
GO:0016925 protein sumoylation
GO:0032204 regulation of telomere maintenance
GO:0051304 chromosome separation
GO:0071139 resolution of DNA recombination intermediates
GO:0140588 chromatin looping
GO:1990683 DNA double-strand break attachment to nuclear envelope
Cellular Component
GO:0000781 chromosome, telomeric region
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005739 mitochondrion
GO:0030915 Smc5-Smc6 complex
GO:0035861 site of double-strand break

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7tve, PDBe:7tve, PDBj:7tve
PDBsum7tve
PubMed35648833
UniProtQ12749|SMC6_YEAST Structural maintenance of chromosomes protein 6 (Gene Name=SMC6)

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