Structure of PDB 7syk Chain D

Receptor sequence
>7sykD (length=221) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
KEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVL
KIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIIL
AKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSA
PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK
ETVFTKSPYQEFTDHLVKTHT
3D structure
PDB7syk Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.
ChainD
Resolution4.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D V112 Q113 K114 Q115 T116 R117 A118 R121 K125 T185 R187 G189 S190 R194 I196 V205 S206 Y223 R227 C229 T230 T232 N235 K238 Y250 V55 Q56 K57 Q58 T59 R60 A61 R64 K68 T128 R130 G132 S133 R137 I139 V148 S149 Y166 R170 C172 T173 T175 N178 K181 Y193
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7syk, PDBe:7syk, PDBj:7syk
PDBsum7syk
PubMed35822879
UniProtG1SV32|RL7_RABIT Large ribosomal subunit protein uL30 (Gene Name=RPL7)

[Back to BioLiP]