Structure of PDB 7qiw Chain D

Receptor sequence

>7qiwD (length=251) Species: 4081 (Solanum lycopersicum) [Search protein sequence]

GRVIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHD
PGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNV
LPLRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRVKLP
SGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG
VAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAR
A

3D structure

PDB

7qiw Cryo-EM structure and rRNA modification sites of a plant ribosome.

Chain

Resolution

2.35 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	G2 R3 V4 A7 Q8 R9 K10 G11 S14 V15 K17 S18 H19 T20 H21 H22 R23 G25 T31 F34 R37 G39 Y40 H50 P52 R54 R64 F67 R68 Y69 K70 H71 T84 G85 F87 Y89 A94 T95 H118 K119 V125 F126 A127 R128 C129 S130 G131 D132 L150 P151 S152 K156 G172 G173 R174 T175 K177 M179 L180 K181 A182 G183 H187 K188 K192 R193 N194 W196 P197 K198 V199 R200 G201 V202 M204 N205 P206 V207 E208 H211 G213 G214 N215 H216 Q217 H218 G220 H221 A222 S223 T224 V225 R226 R227 D228 P230 P231 G232 Q233 K234 V235 G236 L237 I238 A239 A240 R241 R242 T243 G244 R245 L246	G1 R2 V3 A6 Q7 R8 K9 G10 S13 V14 K16 S17 H18 T19 H20 H21 R22 G24 T30 F33 R36 G38 Y39 H49 P51 R53 R63 F66 R67 Y68 K69 H70 T83 G84 F86 Y88 A93 T94 H117 K118 V124 F125 A126 R127 C128 S129 G130 D131 L149 P150 S151 K155 G171 G172 R173 T174 K176 M178 L179 K180 A181 G182 H186 K187 K191 R192 N193 W195 P196 K197 V198 R199 G200 V201 M203 N204 P205 V206 E207 H210 G212 G213 N214 H215 Q216 H217 G219 H220 A221 S222 T223 V224 R225 R226 D227 P229 P230 G231 Q232 K233 V234 G235 L236 I237 A238 A239 R240 R241 T242 G243 R244 L245

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7qiw, PDBe:7qiw, PDBj:7qiw
PDBsum	7qiw
PubMed	35643637
UniProt	P29766\|RL8_SOLLC Large ribosomal subunit protein uL2 (Gene Name=RPL8)

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