Structure of PDB 7ptr Chain D

Receptor sequence
>7ptrD (length=725) Species: 309800 (Haloferax volcanii DS2) [Search protein sequence]
ERGNLDADSESFNKTIQSGDRVFLGEEISTDAGLGASNPLLTGTAGNSEG
VSLDLSSPIPQTTENQPLGTYDVDGSGSATTPNVTLLAPRITDSEILTSS
GGDVTGSAISSSDAGNLYVNADYNYESAEKVEVTVEDPSGTDITNEVLSG
TDTFVDDGSIGSTSSTGGGVGIDMSDQDAGEYTIILEGAEDLDFGDATET
MTLTISSQDEIGIELDSESVTQGTDVQYTVTNGIDGNEHVVAMDLSDLQN
DATTEQAKEVFRNIGDTSEVGIANSSATNTSGSSTGPTVETADIAYAVVE
IDGASAVGGIETQYLDDSEVDLEVYDAGVSATAAVGQDATNDITLTIEEG
GTTLSSPTGQYVVGSEVDINGTATSSDSVAIYVRDDGDWQLLEIGGDNEI
SVDSDDTFEEEDIALSGLSGDGSSILSLTGTYRIGVIDASDADVGGDGSV
DDSLTTSEFTSGVSSSNSIRVTDQALTGQFTTINGQVAPVETGTVDINGT
ASGANSVLVIFVDERGNVNYQEVSVDSDGTYDEDDITVGLTQGRVTAHIL
SVGRDSAIGDGSLPSGPSNGATLNDLTGYLDTLDQNNNNGEQINELIASE
TVDETASDDLIVTETFRLAESSTSIDSIYPDAAEAAGINPVATGETMVIA
GSTNLKPDDNTISIEVTNEDGTSVALEDTDEWNNDGQWMVEIDTTDFETG
TFTVEADDGDNTDTVNVEVVSERED
3D structure
PDB7ptr Complete atomic structure of a native archaeal cell surface.
ChainD
Resolution3.46 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA D D106 D108 G109 G111 A113 D72 D74 G75 G77 A79
BS02 CA D D589 A591 S641 D642 D643 D555 A557 S607 D608 D609
BS03 CA D D594 S596 L597 E634 E638 D560 S562 L563 E600 E604
BS04 BGC D E35 N47 T49 E1 N13 T15
BS05 BGC D N308 S310 A311 P321 T325 N274 S276 A277 P287 T291
BS06 BGC D S52 G53 N117 S18 G19 N83
Gene Ontology
Biological Process
GO:0071555 cell wall organization
Cellular Component
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0030115 S-layer

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ptr, PDBe:7ptr, PDBj:7ptr
PDBsum7ptr
PubMed34818541
UniProtP25062|CSG_HALVD Cell surface glycoprotein (Gene Name=csg)

[Back to BioLiP]