Structure of PDB 7oqc Chain D

Receptor sequence
>7oqcD (length=576) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
ALRGLDTQFLQDNTALVQAYRGLDWSDISSLTQMVDVIEQTVVKYGNPND
SIKLALETILWQILRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKW
FPTSLELWCDYLNVLCVNNPNETDFIRNNFEIAKDLIGKQFLSHPFWDKF
IEFEVGQKNWHNVQRIYEYIIEVPLHQYARFFTSYKKFLNEKNLKTTRNI
DIVLRKTQTTVNEIWQFESKIKQPFFNLGQVLNDDLENWSRYLYHENTWM
MYIKWLTKKNISDEVVVDIYQKANTFLPLDFKTLRYDFLRFLKRKYRSNN
TLFNNIFNETVSRYLKIWPNDILLMTEYLCMLKRHSFKNSLDQSPKEILE
KQTSFTKILETSITNYINNQIDAKVHLQTLINDKNLSIVVVELIKTTWLV
LKNNMQTRKYFNLYQKNILIKNSVPFWLTYYKFEKSNVNFTKLNKFIREL
GVEIYLPTTVMNDILTDYKTFYLTHSNIVTYESSIIDSNTFDPILYPELK
MSNPKYDPVDWHKKTEWKEAGHIGITTERPQISNSIIECNSGTLIQKPIS
LPNFRNLEKINQVKINDLYTEEFLKE
3D structure
PDB7oqc Structural insights into how Prp5 proofreads the pre-mRNA branch site.
ChainD
Resolution4.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D F605 R606 N607 E609 F554 R555 N556 E558
Gene Ontology
Molecular Function
GO:0030627 pre-mRNA 5'-splice site binding
Biological Process
GO:0000395 mRNA 5'-splice site recognition
GO:0000398 mRNA splicing, via spliceosome
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000243 commitment complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005685 U1 snRNP
GO:0071004 U2-type prespliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7oqc, PDBe:7oqc, PDBj:7oqc
PDBsum7oqc
PubMed34349264
UniProtP39682|PRP39_YEAST Pre-mRNA-processing factor 39 (Gene Name=PRP39)

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