Structure of PDB 7oma Chain D

Receptor sequence

>7omaD (length=630) Species: 83810 (Thosea asigna virus) [Search protein sequence]

RLSLEAMLAERAMVARQDLAGLKRKLAGADRVLAPQSPEQCGRESAQAQA
RSVTSELKSAVKEAQGLEHQTLDFLEQLGEYPVCGILHGDHPVHPSGTHN
NNGKVSVKRQFAAGVSDALTCAFRFEDSDLVRETALKTTYTDGTWAGFVQ
RLKMQTTRKCVQEKVSRKLLKQLFPYDPQKLVDVSGELSELVLGIKTNAI
ASAGPPYWRTKRDALPDMLDCVLPLLYDHIVRKDLTTLRNKHPELFLAEC
KNKTDRYEVESLGEKTRPYFSHPFHLSALVSVLSQSFSGALKIMTEDSTS
FNAYGFSWTNGGAEDLAIWARQAGEAGKKPPRIACYGDDTDIYYRKDGKL
YRICPDFKQMDGSVDATTIEAVVDYVVDAHVKQYPTARQFWEEVGKLWVE
MATQSPFLIDGTKVYRKMQKDGLMTGVVGTTLFDTVKSALAYNDWADQLM
FGSLNLLEEKYAIEFFKNKHGLVIKEGTWKPALVNEDPGFGELWTEQKFL
GLQLKVVRRENEKVYVPNLPFEDWLTMWVTPRSETETMRERTLFDRARGL
LVTGAVFDERARGLMGAVINSTAPEVVCMRVQISDGYPSYDWVVSLYSRD
HPCDMPRVFPEAATLIASYRKQVMDTRVVI

3D structure

PDB

7oma Snapshots of a Non-Canonical RdRP in Action.

Chain

Resolution

3.1 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	K266 R269 R280 Y349 D351 D374 T443 T444 D447 M540 R545 D563 R564	K253 R256 R267 Y336 D338 D361 T430 T431 D434 M527 R532 D545 R546
BS02	rna	D	A214 K224 K264 K266 T267 Y282 S294 Y317 G318 S320 T322 Y349 G439 V441 W633 L637	A201 K211 K251 K253 T254 Y269 S281 Y304 G305 S307 T309 Y336 G426 V428 W592 L596

External links

PDB	RCSB:7oma, PDBe:7oma, PDBj:7oma
PDBsum	7oma
PubMed	34203380
UniProt	Q6A562

[Back to BioLiP]