Structure of PDB 7k78 Chain D

Receptor sequence
>7k78D (length=94) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
ARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLA
AYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSST
3D structure
PDB7k78 Structural and dynamic mechanisms of CBF3-guided centromeric nucleosome formation.
ChainD
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D A36 Y46 G57 I58 S59 Q60 S91 T92 A1 Y11 G22 I23 S24 Q25 S56 T57
BS02 dna D K38 Y44 K3 Y9
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Biological Process
GO:0000122 negative regulation of transcription by RNA polymerase II
GO:0006301 postreplication repair
GO:0006325 chromatin organization
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome
GO:0031298 replication fork protection complex
GO:0032991 protein-containing complex

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Cellular Component
External links
PDB RCSB:7k78, PDBe:7k78, PDBj:7k78
PDBsum7k78
PubMed33741944
UniProtP02293|H2B1_YEAST Histone H2B.1 (Gene Name=HTB1)

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