Structure of PDB 7drm Chain D

Receptor sequence
>7drmD (length=309) Species: 391625 (Plesiocystis pacifica SIR-1) [Search protein sequence]
SHMTNLDTSIVVVGSPDDLHVQSVTEGLRARGHEPYVFDTQRFPEEMTVS
LGEQGASIFVDGQQIARPAAVYLRSLYQSPDADKAMQDNWRRTLLAFRER
STLMSAVLLRWEEAGTAVYNSPRASANITKPFQLALLRDAGLPVPRSLWT
NDPEAVRRFHAEVGDCIYKPVAGGARTRKLEAKDLEADRIERLSAAPVCF
QELLTGDDVRVYVIDDQVICALRIVDEIDFRQAEERIEAIEISDEVKDQC
VRAAKLVGLRYTGMDIKAGADGNYRVLELNASAMFRGFEGRANVDICGPL
CDALIAQTK
3D structure
PDB7drm Molecular mechanism underlying substrate recognition of the peptide macrocyclase PsnB.
ChainD
Resolution3.28 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 peptide D R95 L98 R101 R92 L95 R98
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016879 ligase activity, forming carbon-nitrogen bonds
GO:0046872 metal ion binding
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:7drm, PDBe:7drm, PDBj:7drm
PDBsum7drm
PubMed34475564
UniProtA6G4D7

[Back to BioLiP]