Structure of PDB 7dnf Chain D

Receptor sequence

>7dnfD (length=153) Species: 32630 (synthetic construct) [Search protein sequence]

DLGKKLLEAARAGQDDEVRILMANGADVNANDVYGITPLHLAAYMGHLEI
VEVLLKYGVDVNASDQFGNTPLHLAADDGHLEIVEVLLKHGTDVNATDTW
GSTPLHLAAHRGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA
EIL

3D structure

PDB

7dnf Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.

Chain

Resolution

1.78 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	D	R23 Y46 I48 H52 Y56 M57 D77 F79 N81 L86 D89 D90 W112 R123	R11 Y34 I36 H40 Y44 M45 D65 F67 N69 L74 D77 D78 W100 R111

External links

PDB	RCSB:7dnf, PDBe:7dnf, PDBj:7dnf
PDBsum	7dnf
PubMed	34795280

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