Structure of PDB 7c06 Chain D

Receptor sequence
>7c06D (length=187) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence]
SIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPI
HEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGN
VYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSE
CQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAE
3D structure
PDB7c06 Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1.
ChainD
Resolution3.02 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D T11 E12 F20 K23 R28 H29 C33 S34 R35 E146 C148 C149 R150 Q151 R159 C163 N164 F165 T5 E6 F14 K17 R22 H23 C27 S28 R29 E140 C142 C143 R144 Q145 R153 C157 N158 F159
BS02 ZN D C18 C27 C33 H37 C12 C21 C27 H31
BS03 ZN D C149 C157 C163 H167 C143 C151 C157 H161
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0030628 pre-mRNA 3'-splice site binding
GO:0046872 metal ion binding
Biological Process
GO:0000389 mRNA 3'-splice site recognition
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0045292 mRNA cis splicing, via spliceosome
Cellular Component
GO:0000243 commitment complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005829 cytosol
GO:0071004 U2-type prespliceosome
GO:0089701 U2AF complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7c06, PDBe:7c06, PDBj:7c06
PDBsum7c06
PubMed32958768
UniProtQ09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit (Gene Name=SPAP8A3.06)

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