Structure of PDB 6z11 Chain D

Receptor sequence
>6z11D (length=1254) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence]
VNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFG
PTRDWECYCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTH
IWYFKGVPSRLGYLLDLAPKDLEKIIYFAAYVITSVDDEMRHNELSTLEA
EMAVEKKAVEDQRDADLEARAQKLEADLAELEAEGAKSDVRRKVRDSGER
EMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVLYRELQDRYGEYFT
GAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVAAFQ
SPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL
IDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLK
GKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVM
KRLVDLNHAQNIKSAKRMVERQRPQVWDVLEEVIAEHPVLLNRAPTLHRL
GIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARI
LMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQAATKDAP
EQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLFENGWKP
GDAWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIV
VAQTVDKLKDAGFYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIER
KYQRGALNHTERNESLVKIWQDATEEVGKALEEFYPADNPIITIVKSGAT
GNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFREGLTVLEYFINTHGARK
GLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVTLAERGPDG
TLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGIT
TVKVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGT
QLTMRTFHVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITI
VPDDGGEEVVYDKLSKRQRLRVITHEEGVLSDGDHVEVGDQLMEGAADPH
EVLRVQGPREVQIHLVKEVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIID
SGSTEFLPGSLTERAEFEAENRRVGRPVLMGITKASLATDSWLSAASFQE
TTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGISRYRNIQVQPTEEA
RAAA
3D structure
PDB6z11 HelD, a helicase-like protein from gram-positive bacteria in complex with RNA polymerase
ChainD
Resolution3.36 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D C890 C967 C974 C977 C883 C960 C967 C970
BS02 ZN D C60 C62 C75 C57 C59 C72
BS03 MG D D535 D537 D539 D528 D530 D532
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6z11, PDBe:6z11, PDBj:6z11
PDBsum6z11
PubMed
UniProtA0QS66|RPOC_MYCS2 DNA-directed RNA polymerase subunit beta' (Gene Name=rpoC)

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