Structure of PDB 6ytt Chain D

Receptor sequence
>6yttD (length=705) Species: 1341692 (Clostridium autoethanogenum DSM 10061) [Search protein sequence]
MNLFQTVFTGSKQALAAAEGIVKQAVDEKGRDYKVAFPDTAYSLPVIFAA
TGKKITNVGELEGALDIVRSLIVEEEMLDKLLNSGLATAVAAEIIEAAKY
VLSDAPYAEPCVGFISDPIIRSLGVPLVTGDIPGVAVILGECPDSETAAK
IIKDYQSKGLLTCLVGKVIDQAIEGKVKMGLDLRVIPLGYDVTSVIHVVT
IAIRAALIFGGIKGGQLNDILKYTAERVPAFVNAFGPLSELVVSAGAGAI
ALGFPVLTDQVVPEVPTLLLTQKDYDKMVKTSLEARNIKIEIPIPVSFAA
AFEGERIRKNDMLAEFGGNKTKAWELVMCADQGEVEDHKIEVIGPDIDTI
DKAPGRMPLGMLIKVSGTNMQKDFEPVLERRLHYFLNYIEGVMHVGQRNL
TWVRIGKEAFEKGFRLKHFGEVIYAKMLDEFGSVVDKCEVTIITDPGKAE
ELEGKYAVPRYKERDARLESLVDEKVDTFYSCNLCQSFAPAHVCIVTPER
LGLCGAVSWLDAKATLELNPTGPCQAVPKEGVVDENLGIWEKVNETVSKI
SQGAVTSVTLYSILQDPMTSCGCFECITGIMPEANGVVMVNREFGATTPL
GMTFGELASMTGGGVQTPGFMGHGRQFIASKKFMKGEGGLGRIVWMPKEL
KDFVAEKLNKTAKELYNIDNFADMICDETIATESEEVVKFLEEKGHPALK
MDPIM
3D structure
PDB6ytt Gas channel rerouting in a primordial enzyme: Structural insights of the carbon-monoxide dehydrogenase/acetyl-CoA synthase complex from the acetogen Clostridium autoethanogenum.
ChainD
Resolution3.01 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 D C485 C488 C497 L506 C507 V510 C574 C576 C482 C485 C494 L503 C504 V507 C571 C573
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 24 11:32:52 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6ytt', asym_id = 'D', title = 'Gas channel rerouting in a primordial enzyme: St...x from the acetogen Clostridium autoethanogenum. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6ytt', asym_id='D', title='Gas channel rerouting in a primordial enzyme: St...x from the acetogen Clostridium autoethanogenum. ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003824,0006084,0016491,0043885', uniprot = '', pdbid = '6ytt', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0006084,0016491,0043885', uniprot='', pdbid='6ytt', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>