Structure of PDB 6yp7 Chain D

Receptor sequence
>6yp7D (length=341) Species: 3888 (Pisum sativum) [Search protein sequence]
NDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWYTH
GLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDLTRWCQLGGLW
TFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYP
LGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLC
AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAF
SNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEF
ETFYTKNILLNEGIRAWMATQDQPHENLIFPEEVLPRGNAL
3D structure
PDB6yp7 High-Light versus Low-Light: Effects on Paired Photosystem II Supercomplex Structural Rearrangement in Pea Plants.
ChainD
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.10.3.9: photosystem II.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PHO D L210 F258 L198 F246
BS02 PHO D W49 F126 N143 F147 F174 G175 V176 W37 F114 N131 F135 F162 G163 V164
BS03 BCT D H215 H269 H203 H257
BS04 CLA D I183 F186 W192 H198 V202 S283 I171 F174 W180 H186 V190 S271
BS05 CLA D P40 C41 F44 L91 L92 W94 F114 H118 P28 C29 F32 L79 L80 W82 F102 H106
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0009055 electron transfer activity
GO:0010242 oxygen evolving activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0009507 chloroplast
GO:0009523 photosystem II
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yp7, PDBe:6yp7, PDBj:6yp7
PDBsum6yp7
PubMed33207833
UniProtP06006|PSBD_PEA Photosystem II D2 protein (Gene Name=psbD)

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