Structure of PDB 6yba Chain D

Receptor sequence
>6ybaD (length=908) Species: 10524 (Human adenovirus 41) [Search protein sequence]
MMPQWSYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHD
VTTDRSQRLTLRFVPVDREDTAYSYKVRFTLAVGDNRVLDMASTYFDIRG
VLDRGPSFKPYSGTAYNSLAPKTAPNPCEWKDNNKIKVRGQAPFIGTNIN
KDNGIQIGTDTTNQPIYADKTYQPEPQVGQTQWNSEVGAAQKVAGRVLKD
TTPMLPCYGSYAKPTNEKGGQASLITSDVNLQFFALPSTPNEPKAVLYAE
NVSIEAPDTHLVYKPDVAQGTISSADLLTQQAAPNRPNYIGFRDNFIGLM
YYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLMLDALGDRSRYFSMW
NQAVDSYDPDVRIIENHGVEDELPNYCFPLGGSAATDTYSGIKANGQTWT
ADDNYADRGAEIESGNIFAMEINLAANLWRSFLYSNVALYLPDSYKITPD
NITLPENKNTYAYMNGRVAVPSALDTYVNIGARWSPDPMDNVNPFNHHRN
AGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVN
MILQSSLGNDLRVDGASVRFDSINLYANFFPMAHNTASTLEAMLRNDTND
QSFNDYLCAANMLYPIPSNATSVPISIPSRNWAAFRGWSFTRLKTKETPS
LGSGFDPYFTYSGSVPYLDGTFYLNHTFKKVSIMFDSSVSWPGNDRLLTP
NEFEIKRTVDGEGYNVAQCNMTKDWFLIQMLSHYNIGYQGFYVPESYKDR
MYSFFRNFQPMSRQVVNTTTYKEYQNVTLPFQHNNSGFVGYMGPTMREGQ
AYPANYPYPLIGQTAVPSLTQKKFLCDRTMWRIPFSSNFMSMGALTDLGQ
NMLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRIHQPHRGVIEAVY
LRTPFSAG
3D structure
PDB6yba Cryo-EM structure of enteric adenovirus HAdV-F41 highlights structural variations among human adenoviruses.
ChainD
Resolution4.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D Q30 R33 A34 T35 G42 R46 N47 T49 Q25 R28 A29 T30 G37 R41 N42 T44
BS02 peptide D L348 Y619 R649 R845 G856 A857 E894 L335 Y606 R636 R832 G843 A844 E881
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075521 microtubule-dependent intracellular transport of viral material towards nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039623 T=25 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yba, PDBe:6yba, PDBj:6yba
PDBsum6yba
PubMed33627423
UniProtP11820|CAPSH_ADE41 Hexon protein (Gene Name=L3)

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