Structure of PDB 6xub Chain D

Receptor sequence
>6xubD (length=228) Species: 1717 (Corynebacterium diphtheriae) [Search protein sequence]
EELNSMQRYSQFAVFRAIPGALGSDRAEIVAQAQSFFDGLETAGKVEVRG
IYDLAGCRAEADFMIWWIAEEFEEIQAAFARFRRETVLGQVSEVAWLGNS
LHRPAEFNRSHLPSFIMGEIPGDWITVYPFVRSYDWYIMDPQKRRKILAE
HGQAARDFPDVRANTVPAFALGDYEWMLAFEAPRLDRIVDLMHKMRYTEA
RLHVREETPFFTGRRVSEVSELVNVLPG
3D structure
PDB6xub Actinobacterial Coproheme Decarboxylases Use Histidine as a Distal Base to Promote Compound I Formation.
ChainD
Resolution1.78 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.3.98.5: hydrogen peroxide-dependent heme synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 VOV D A112 H118 Y135 F137 R139 W143 H158 A162 R163 W183 L185 F187 M199 R208 A105 H111 Y128 F130 R132 W136 H151 A155 R156 W176 L178 F180 M192 R201
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0006783 heme biosynthetic process
GO:0006785 heme B biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6xub, PDBe:6xub, PDBj:6xub
PDBsum6xub
PubMed32440366
UniProtQ6NGV6

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