Structure of PDB 6xjw Chain D

Receptor sequence

>6xjwD (length=214) Species: 9606 (Homo sapiens) [Search protein sequence]

SDIQMTQSPSSLSASVGDRVTITCRASQSVYYSVAWYQQKPGKAPKLLIY
SASYLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYRRRPITFG
QGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWK
VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ
GLSSPVTKSFNRGE

3D structure

PDB

6xjw Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.

Chain

Resolution

1.918 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	Y54 S57	Y54 S57
BS02	rna	D	Q28 S29 Y31 Y32 S33 S51 S53 R67 Y92 R93 R94 R95	Q28 S29 Y31 Y32 S33 S51 S53 R67 Y92 R93 R94 R95

External links

PDB	RCSB:6xjw, PDBe:6xjw, PDBj:6xjw
PDBsum	6xjw
PubMed	35058645

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