Structure of PDB 6xjq Chain D

Receptor sequence

>6xjqD (length=214) Species: 9606 (Homo sapiens) [Search protein sequence]

SDIQMTQSPSSLSASVGDRVTITCRASQSVYYSVAWYQQKPGKAPKLLIY
SASYLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYRRRPITFG
QGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWK
VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQ
GLSSPVTKSFNRGE

3D structure

PDB

6xjq Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.

Chain

Resolution

1.708 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	Y54 S57	Y54 S57
BS02	rna	D	Q28 S29 Y31 Y32 S33 S51 S53 R67 Y92 R93 R94 R95	Q28 S29 Y31 Y32 S33 S51 S53 R67 Y92 R93 R94 R95

External links

PDB	RCSB:6xjq, PDBe:6xjq, PDBj:6xjq
PDBsum	6xjq
PubMed	35058645

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