Structure of PDB 6xfa Chain D

Receptor sequence
>6xfaD (length=406) Species: 10376 (human gammaherpesvirus 4) [Search protein sequence]
DFVPWTVDNLKSQFEAVGLLMAHSYLPANAEEGIAYPPLVHTYESLSPAS
TCRVCDLLDTLVNHSDAPVAFFEDYALLCYYCLNAPRAWISSLITGMDFL
HILIKYFPMAGGLDSLFMPSRILAIDIQLHFYICRCFLPVSSSDMIRNAN
LGYYKLEFLKSILTGQSPANFCFKSMWTKADYCGLLLGTWQGTDLLGGPG
AELALAITRPEAGDHSQGPCLLAPMFGLRHKNASRTICPLCESLGAHPDA
KDTLDRFKSLILDSFGNNIKILDRIVFLIKTQNTLLDVPCPRLRAWLQMC
TPQDFHKHLFCDPLCAINHSITNPSVLFGQIYPPSFQAFKAALAAGQNLE
QGVCDSLITLVYIFKSTQVARVGKTILVDVTKELDVVLRIHGLDLVQSYQ
TSQVYV
3D structure
PDB6xfa A pentameric protein ring with novel architecture is required for herpesviral packaging.
ChainD
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN D C54 H132 C138 C52 H130 C136
BS02 ZN D C316 C319 H386 C393 C238 C241 H308 C315
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0019031 viral envelope
GO:0030430 host cell cytoplasm
GO:0042025 host cell nucleus

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Molecular Function
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Cellular Component
External links
PDB RCSB:6xfa, PDBe:6xfa, PDBj:6xfa
PDBsum6xfa
PubMed33554858
UniProtP03184|UL32_EBVB9 Packaging protein UL32 homolog (Gene Name=BFLF1)

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