Structure of PDB 6w2t Chain D

Receptor sequence
>6w2tD (length=221) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
KEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGAALKDEVL
KIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGLKCSKEVATAIRGAIIL
AKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSA
PVPKKLLLMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK
ETVFTKSPYQEFTNHLMKTHT
3D structure
PDB6w2t A complex IRES at the 5'-UTR of a viral mRNA assembles a functional 48S complex via an uAUG intermediate.
ChainD
Resolution3.36 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D K89 V112 Q113 K114 Q115 T116 R117 K125 T185 G189 S190 R194 V205 S206 Y223 T224 A226 R227 C229 T230 T232 N235 Y250 K32 V55 Q56 K57 Q58 T59 R60 K68 T128 G132 S133 R137 V148 S149 Y166 T167 A169 R170 C172 T173 T175 N178 Y193
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6w2t, PDBe:6w2t, PDBj:6w2t
PDBsum6w2t
PubMed32286223
UniProtG1SWM1|RS2_RABIT Small ribosomal subunit protein uS5 (Gene Name=RPS2)

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