Structure of PDB 6vwl Chain D

Receptor sequence
>6vwlD (length=175) Species: 562 (Escherichia coli) [Search protein sequence]
LHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNA
AADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERL
ITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLD
ITITTTAKSDEEGRALLAAFDFPFR
3D structure
PDB6vwl mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.
ChainD
Resolution3.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D M25 Q26 Q62 K63 L65 K68 T89 R91 M23 Q24 Q60 K61 L63 K66 T87 R89
BS02 rna D K32 T34 N36 A69 R70 F76 I84 K87 S120 F121 D122 R124 N126 S128 V131 R132 G150 L151 D152 T156 K30 T32 N34 A67 R68 F74 I82 K85 S118 F119 D120 R122 N124 S126 V129 R130 G148 L149 D150 T154
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 15:36:21 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6vwl', asym_id = 'D', title = 'mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6vwl', asym_id='D', title='mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6vwl', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6vwl', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>