Structure of PDB 6ven Chain D

Receptor sequence
>6venD (length=93) Species: 8355 (Xenopus laevis) [Search protein sequence]
KTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRL
AHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTS
3D structure
PDB6ven Structural basis for COMPASS recognition of an H2B-ubiquitinated nucleosome.
ChainD
Resolution3.37 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D T32 I39 Y40 T2 I9 Y10
BS02 dna D Y42 S56 S87 T88 Y12 S26 S57 T58
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:6ven, PDBe:6ven, PDBj:6ven
PDBsum6ven
PubMed31922488
UniProtP02281|H2B11_XENLA Histone H2B 1.1

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