Structure of PDB 6vav Chain D

Receptor sequence
>6vavD (length=232) Species: 3818 (Arachis hypogaea) [Search protein sequence]
AETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKVNSVGRVLYAM
PVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGS
IGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKT
VPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDITTIAQVVDLKAKLPE
RVKFGFSASGSLGGRQIHLIRSWSFTSTLITT
3D structure
PDB6vav Crystal structures of peanut lectin in the presence of synthetic beta-N- and beta-S-galactosides disclose evidence for the recognition of different glycomimetic ligands.
ChainD
Resolution1.85 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 QTY D D80 D83 G103 Y125 N127 S211 G213 G214 D80 D83 G103 Y125 N127 S211 G213 G214 MOAD: Kd=690uM
BS02 MN D E121 D123 D132 H137 E121 D123 D132 H137
BS03 CA D D123 Y125 N127 D132 D123 Y125 N127 D132
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6vav, PDBe:6vav, PDBj:6vav
PDBsum6vav
PubMed33135679
UniProtP02872|LECG_ARAHY Galactose-binding lectin

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