Structure of PDB 6ude Chain D

Receptor sequence
>6udeD (length=492) Species: 1338011 (Elizabethkingia anophelis NUHP1) [Search protein sequence]
EKLILALDQGTTSSRAILFNKSGEIKFVSQKSFEQIFPTPGWVEHDPNEI
WSSQISVAAEVIAKAGEVAAIGITNQRETTVVWDRHTSEPIYNAIVWQDR
RTSKYCDELKSQGHTDEIKQKTGLVLDAYFSATKLKWILDNVEGAREKAE
AGDLCFGTVDTWLIWKLTRGKMFITDVSNASRTMMFNIRTMDWDDDLLKL
FNIPRAILPEVKQSSEVYGETSTTLFSTKIPIAGIAGDQQAALFGQMCTK
PGMVKNTYGTGCFLLMNTGNEAVYSKNNLLTTVAWKINGEVSYALEGSVF
VGGAAIQWLRDGLKIIHDSSEVSTLAETVEDNGGVYFVPALTGLGAPYWD
QYARGTIIGVTRGTTDGHIARATLEGIAFQVYDIVKAMEADAETQSTELR
VDGGASASNLLMQIQSDLFGFKIIRPKTLETTALGAAYLAGLAVGFWESI
DEIQSQWIIEKEFTPKEDKTKIDNMVSFWHKAVKRSQAWIED
3D structure
PDB6ude Crystal structure of Glycerol kinase from Elizabethkingia anophelis NUHP1 in complex with ADP and glycerol
ChainD
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.1.30: glycerol kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D R18 G266 T267 G310 I313 S327 G411 A412 R15 G259 T260 G303 I306 S320 G404 A405
BS02 MG D G13 T15 G10 T12
Gene Ontology
Molecular Function
GO:0004370 glycerol kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016773 phosphotransferase activity, alcohol group as acceptor
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006071 glycerol metabolic process
GO:0006072 glycerol-3-phosphate metabolic process
GO:0016310 phosphorylation
GO:0019563 glycerol catabolic process
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Cellular Component
External links
PDB RCSB:6ude, PDBe:6ude, PDBj:6ude
PDBsum6ude
PubMed
UniProtA0A077EJ65

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