Structure of PDB 6u8a Chain D

Receptor sequence
>6u8aD (length=617) Species: 10116 (Rattus norvegicus) [Search protein sequence]
PPPMESPFQREFDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE
GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKLLVNAQCTDEFYQ
GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP
LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPEN
SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH
ILQREFSGPYQPLSRKFTEWCYGPVRVSLYDLSSVDSWEKNSVLEIIAFH
CKSPNRHRMVVLEPLNKLLQEKWDRLVSRFFFNFACYLVYMFIFTVVAYH
QPSLFGESMLLLGHILILLGGIYLLLGQLWYFWRRRLFIWISFMDSYFEI
LFLLQALLTVLSQVLRFMETEWYLPLLVLSLVLGWLNLLYYTRGFQHTGI
YSVMIQKVILRDLLRFLLVYLVFLFGFAVALVSLSREARPAPYRSILDAS
LELFKFTIGMGELAFQEQLRFRGVVLLLLLAYVLLTYVLLLNMLIALMSE
TVNHVADNSWSIWKLQKAISVLEMENGYWWCRRKKHREGRLLKVGTPDER
WCFRVEEVNWAAWEKTL
3D structure
PDB6u8a Molecular mechanism of TRPV2 channel modulation by cannabidiol.
ChainD
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 P0T D L537 F540 L541 L637 M640 L463 F466 L467 L540 M543
BS02 P0T D L631 Y634 V635 L534 Y537 V538
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005261 monoatomic cation channel activity
GO:0005262 calcium channel activity
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0006915 apoptotic process
GO:0008285 negative regulation of cell population proliferation
GO:0009266 response to temperature stimulus
GO:0045773 positive regulation of axon extension
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0090280 positive regulation of calcium ion import
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030424 axon
GO:0032584 growth cone membrane
GO:0042470 melanosome
GO:0044295 axonal growth cone
GO:0044297 cell body

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6u8a, PDBe:6u8a, PDBj:6u8a
PDBsum6u8a
PubMed31566564
UniProtQ9WUD2|TRPV2_RAT Transient receptor potential cation channel subfamily V member 2 (Gene Name=Trpv2)

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