Structure of PDB 6sjg Chain D

Receptor sequence
>6sjgD (length=597) Species: 562 (Escherichia coli) [Search protein sequence]
AVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLE
NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYL
NRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAA
VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA
ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGN
PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV
LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY
RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE
EALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE
QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR
VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP
VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS
3D structure
PDB6sjg A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair.
ChainD
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.6.2.3: DNA 5'-3' helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D T205 T239 H241 A246 Q247 P248 V304 E305 R445 N487 N495 T537 H539 K540 V560 T196 T230 H232 A237 Q238 P239 V295 E296 R436 N478 N486 T528 H530 K531 V551
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004386 helicase activity
GO:0004527 exonuclease activity
GO:0005524 ATP binding
GO:0008854 exodeoxyribonuclease V activity
GO:0016853 isomerase activity
GO:0016887 ATP hydrolysis activity
GO:0017116 single-stranded DNA helicase activity
GO:0043139 5'-3' DNA helicase activity
Biological Process
GO:0000724 double-strand break repair via homologous recombination
GO:0000725 recombinational repair
GO:0006281 DNA repair
GO:0006302 double-strand break repair
GO:0006310 DNA recombination
GO:0006974 DNA damage response
GO:0032508 DNA duplex unwinding
Cellular Component
GO:0009338 exodeoxyribonuclease V complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6sjg, PDBe:6sjg, PDBj:6sjg
PDBsum6sjg
PubMed31907455
UniProtP04993|RECD_ECOLI RecBCD enzyme subunit RecD (Gene Name=recD)

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