Structure of PDB 6sa0 Chain D

Receptor sequence

>6sa0D (length=333) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence]

SAATELDVDGVKVRFTNPDKVYFPKLGKNGTKGKLVEYYLSVASGPMLAL
LRDRPVHLQRFPDGIEGEEIYQKRVPQKHPDYLETCVVTFPSGRTADALK
ITHPSSIIWAAQMGTVTLHPWQVRCPDTEHPDELRVDLDPQPGTGFKEAR
TVACDVLKPLLDELGLVGYPKTSGGRGVHVFLRIKPQWDFIEVRRAGIAL
AREVERRAPDAVTTSWWKEERGERLFIDYNQNARDRTFASAYSVRKTPIA
TVSMPLSWDELRNADPDDYTMNTVPDLLAGRDDPWADIDSVQQSLGPLLD
LVAADEERGLGDLPYPPNYPKMPGEPPRVQPSK

3D structure

PDB

6sa0 Molecular basis for DNA repair synthesis on short gaps by mycobacterial Primase-Polymerase C.

Chain

Resolution

2.209 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	D	R17 N20 K23 Y25 P65 Q115 M116	R14 N17 K20 Y22 P62 Q112 M113
BS02	dna	D	I73 Y74 Q75 K76 R77 F93 S95 R97 D238 N321 Y322 K324 P330 R331	I70 Y71 Q72 K73 R74 F90 S92 R94 D235 N318 Y319 K321 P327 R328
BS03	dna	D	W219 W220 K221 R224 D231 R239 P320	W216 W217 K218 R221 D228 R236 P317
BS04	2KH	D	Y74 H122 D140 D142 S176 R179 G180 H182 Q234 T240 F241 A242 R248	Y71 H119 D137 D139 S173 R176 G177 H179 Q231 T237 F238 A239 R245
BS05	MN	D	D140 D142 D231	D137 D139 D228
BS06	MN	D	D140 D142	D137 D139

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:6sa0, PDBe:6sa0, PDBj:6sa0
PDBsum	6sa0
PubMed	32826907
UniProt	A0R5T1

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