Structure of PDB 6odf Chain D

Receptor sequence
>6odfD (length=419) Species: 11021 (Eastern equine encephalitis virus) [Search protein sequence]
LDTHFTQYKLARPYIADCPNCGHSRCDSPIAIEEVRGDAHAGVIRIQTSA
MFGLKTDGVDLAYMSFMNGKTQKSIKIDNLHVRTSAPCSLVSHHGYYILA
QCPPGDTVTVGFHDGPNRHTCTVAHKVEFRPVGREKYRHPPEHGVELPCN
RYTHKRADQGHYVEMHQPGLVADHSLLSIHSAKVKITVPSGAQVKYYCKC
PDVREGITSSDHTTTCTDVKQCRAYLIDNKKWVYNSGRLPRGEGDTFKGK
LHVPFVPVKAKCIATLAPEPLVEHKHRTLILHLHPDHPTLLTTRSLGSDA
NPTRQWIERPTTVNFTVTGEGLEYTWGNHPPKRVWAQESGEGNPHGWPHE
VVVYYYNRYPLTTIIGLCTCVAIIMVSCVTSVWLLCRTRNLCITPYKLAP
NAQVPILLALLCCIKPTRA
3D structure
PDB6odf Cryo-EM structure of eastern equine encephalitis virus in complex with heparan sulfate analogues.
ChainD
Resolution5.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.21.90: togavirin.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 U97 D N80 H114 N79 H113
BS02 U9A D L2 K156 R157 A158 L1 K155 R156 A157
BS03 U97 D L62 S93 H155 K156 R157 L61 S92 H154 K155 R156
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:6odf, PDBe:6odf, PDBj:6odf
PDBsum6odf
PubMed32245806
UniProtQ4QXJ7|POLS_EEEVF Structural polyprotein

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