Structure of PDB 6npa Chain D

Receptor sequence
>6npaD (length=181) Species: 506591 (Leisingera caerulea) [Search protein sequence]
SKLNRGNIVEFIGGIFDRRGDEEYLGEPVTMAEHMLQGATIAEQNGQPEE
IIVGALLHDIGHFTSEFGMFYHEEAGAEVLEQFFPSVITDCVRYHVAAKR
YLCATKPEYFNRLSEASIHSLKLQGGPMDAEEVAEFEKNPNLKQIIAVRY
LDEAGKRADMETPDYWHFAPMVQRMVDKHMG
3D structure
PDB6npa A New Microbial Pathway for Organophosphonate Degradation Catalyzed by Two Previously Misannotated Non-Heme-Iron Oxygenases.
ChainD
Resolution1.73 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.13.11.90: [1-hydroxy-2-(trimethylamino)ethyl]phosphonate dioxygenase (glycine- betaine-forming).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE D Y30 H40 H64 D65 D166 Y24 H34 H58 D59 D152
BS02 FE2 D D65 H86 H109 D59 H72 H95
BS03 KVP D Y30 L31 H86 K113 S131 S134 R163 Y24 L25 H72 K99 S117 S120 R149
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6npa, PDBe:6npa, PDBj:6npa
PDBsum6npa
PubMed30789718
UniProtA0A4V8H040|TMPB_LEICA [1-hydroxy-2-(trimethylamino)ethyl]phosphonate dioxygenase (glycine-betaine-forming) (Gene Name=tmpB)

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