Structure of PDB 6ndy Chain D

Receptor sequence
>6ndyD (length=322) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG
NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE
KLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMN
GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEIN
VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFK
DVSETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRP
TVNEDDLLKQEQFTRDFGQEGN
3D structure
PDB6ndy Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases.
ChainD
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D K205 W206 M207 E247 K94 W95 M96 E136
BS02 ADP D D134 A136 P175 G176 T177 G178 K179 S180 Y181 M307 D23 A25 P64 G65 T66 G67 K68 S69 Y70 M196
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6ndy, PDBe:6ndy, PDBj:6ndy
PDBsum6ndy
PubMed31184588
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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