Structure of PDB 6l7p Chain D

Receptor sequence
>6l7pD (length=504) Species: 197221 (Thermosynechococcus vestitus BP-1) [Search protein sequence]
STFPWLTTIILFPIVAALAIPFIPDPTGKGRPIRWYALAVGLIDFALIVY
AFTNFYDLNTPGMQLWESYDWIPEIGLRWSVGADGLSMPLILLTGFITTL
AILAAWPVTLKPRLFYFLMLAMYGGQIAVFAVQDMLVFFLAWELELIPVY
LLLAIWGGHKRQYAATKFILYTAGSSLFILVAGLAMAFYGDTVSFDMQTL
AAKDYALGFQLLVYAGFLVAYGVKLPIVPLHTWLPDAHGEATAPVHMLLA
GILLKMGGYALIRMNVDMLPAAHAKFAPVLVILGVVNIIYAALTSYAQRN
LKRKIAYSSISHIGFVLIGIASFTNLGMSGAVLQMVSHGLIGASLFFLVG
ATYDRTHTLILEEMGGVGQKMKKIFAMFTACSLASLALPGMSGFVAELMV
FIGFATSDAYSLPFRVIVVFLAAVGVILTPIYLLSMLREIFYGPENKELV
EHEALVDAEPREVFIIACLLVPIIGIGLYPKLLTQIYDATTGQVIARARE
VLPT
3D structure
PDB6l7p Structural insights into NDH-1 mediated cyclic electron transfer.
ChainD
Resolution3.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 7.1.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AJP D L12 Y70 W72 W80 L11 Y69 W71 W79
BS02 AJP D L12 Y70 L11 Y69
BS03 AJP D F4 T9 F13 V16 F3 T8 F12 V15
BS04 AJP D A47 Y51 A46 Y50
BS05 AJP D A47 Y51 A46 Y50
BS06 AJP D F277 V280 F276 V279
BS07 AJP D V182 A186 F210 G217 V181 A185 F209 G216
BS08 AJP D W6 F13 F56 W5 F12 F55
BS09 AJP D L479 Y480 L478 Y479
Gene Ontology
Molecular Function
GO:0003954 NADH dehydrogenase activity
GO:0005515 protein binding
GO:0008137 NADH dehydrogenase (ubiquinone) activity
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
GO:0048038 quinone binding
GO:0048039 ubiquinone binding
Biological Process
GO:0009060 aerobic respiration
GO:0015990 electron transport coupled proton transport
GO:0042773 ATP synthesis coupled electron transport
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane
GO:0045271 respiratory chain complex I

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6l7p, PDBe:6l7p, PDBj:6l7p
PDBsum6l7p
PubMed32060291
UniProtQ8DKY0|NU4C1_THEVB NAD(P)H-quinone oxidoreductase chain 4 1 (Gene Name=ndhD1)

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