Structure of PDB 6ks6 Chain D

Receptor sequence
>6ks6D (length=523) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
PSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEI
IISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLG
AAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAAS
TSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTID
DTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVN
DYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFL
SKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLGSADLVEEIDS
DGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLV
KERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLA
ENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVST
SAITLASECVKSILRIDDIAFSR
3D structure
PDB6ks6 An ensemble of cryo-EM structures of TRiC reveal its conformational landscape and subunit specificity.
ChainD
Resolution2.99 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D60 T93 T94 D396
Catalytic site (residue number reindexed from 1) D55 T88 T89 D391
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D G40 P41 G92 T93 T94 T156 S159 S160 K161 G414 V484 I497 G35 P36 G87 T88 T89 T151 S154 S155 K156 G409 V479 I492
BS02 MG D D91 S157 D86 S152
BS03 AF3 D N59 D60 G61 T93 T94 K161 D396 N54 D55 G56 T88 T89 K156 D391
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0051082 unfolded protein binding
GO:0140662 ATP-dependent protein folding chaperone
Biological Process
GO:0006457 protein folding
GO:0051086 chaperone mediated protein folding independent of cofactor
Cellular Component
GO:0005737 cytoplasm
GO:0005832 chaperonin-containing T-complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ks6, PDBe:6ks6, PDBj:6ks6
PDBsum6ks6
PubMed31492816
UniProtP39078|TCPD_YEAST T-complex protein 1 subunit delta (Gene Name=CCT4)

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