Structure of PDB 6kod Chain D

Receptor sequence
>6kodD (length=441) Species: 469008 (Escherichia coli BL21(DE3)) [Search protein sequence]
MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTSINIGCIP
TKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAE
FINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTG
LLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRD
IADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIAS
GRQPATASLHPENAGIAVNERGATVVDKRLHTTADNIWAMGDVTGGLQFT
YISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARE
SGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDSH
EMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLVK
3D structure
PDB6kod Structure and function of the hypochlorous acid-induced flavoprotein RclA fromEscherichia coli.
ChainD
Resolution3.0 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) S43 C48 T51 Y168 E172 H426 E431
Catalytic site (residue number reindexed from 1) S43 C48 T51 Y168 E172 H426 E431
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD D I9 G12 E33 Q34 M38 G41 T42 S43 G47 C48 K52 A99 N126 T127 G128 I169 R252 G291 D292 Q298 F299 T300 S303 I9 G12 E33 Q34 M38 G41 T42 S43 G47 C48 K52 A99 N126 T127 G128 I169 R252 G291 D292 Q298 F299 T300 S303
Gene Ontology
Molecular Function
GO:0008823 cupric reductase (NADH) activity
GO:0016491 oxidoreductase activity
GO:0016651 oxidoreductase activity, acting on NAD(P)H
GO:0042803 protein homodimerization activity
GO:0050660 flavin adenine dinucleotide binding
Biological Process
GO:1901530 response to hypochlorite

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6kod, PDBe:6kod, PDBj:6kod
PDBsum6kod
PubMed31988242
UniProtP77212|RCLA_ECOLI Probable pyridine nucleotide-disulfide oxidoreductase RclA (Gene Name=rclA)

[Back to BioLiP]