Structure of PDB 6kdv Chain D

Receptor sequence
>6kdvD (length=280) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
SYLYVEHAVVEREAGGIGIYDQEGLTLAPVAGLGVLFLGPGTRITHAAVR
LLAENGCTVAWVGEGMARFYAQGLGDTRSAARFYRQARAWADPALHLEVV
MRLYRMRFSEPLPEGLTLEQVRGLEGVRVRNAYARWSRETGVPWYGRSYD
RGNWRAADPVNRALSAGASYLYGLAHAAIVSLGFSPALGFIHTGKLLSFV
YDIADLYKADYLVPAAFRTVAESEEAVERRVRRALREAIQEGRLLERMAE
DLLNLFRGLGLPTRPGGLWDLEGEVEGGVA
3D structure
PDB6kdv Crystal structure of Cas1 in complex with branched DNA.
ChainD
Resolution3.11 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D P295 V309 P265 V279
BS02 dna D E31 R32 T65 E11 R12 T45
BS03 dna D S168 Y169 R171 G172 W174 R175 T213 Y221 S148 Y149 R151 G152 W154 R155 T193 Y201
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0004519 endonuclease activity
GO:0004520 DNA endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0043571 maintenance of CRISPR repeat elements
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:6kdv, PDBe:6kdv, PDBj:6kdv
PDBsum6kdv
PubMed31792780
UniProtQ53WG8|CAS1B_THET8 CRISPR-associated endonuclease Cas1 2 (Gene Name=cas1-2)

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