Structure of PDB 6k6w Chain D

Receptor sequence
>6k6wD (length=443) Species: 176280 (Staphylococcus epidermidis ATCC 12228) [Search protein sequence]
LIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGV
DIVIPDIQYVIENKERLKGIFLTHGHEHAIGAVSYVLEQIDAPVYGSKLT
IALVKEAMKARNIKKKVRYYTVNHDSIMRFKNVNVSFFNTTHSIPDSLGV
CIHTSYGSIVYTGEFKFDQSLHGHYAPDLKRMAEIGDEGVFALISDSTEA
EKPGYNTPENIIEHHMYDAFAKVKGRLIVSCYASNFVRIQQVLNIASQLN
RKVSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVENYPKNEVIIIATG
MQGEPVEALSQMARKKHKIMNIEEGDSIFLAITASANMEVIIADTLNELV
RAGAHIIPNNKKIHASSHGCMEELKMMLNIMKPEYFVPVQGEFKMQIAHA
KLAAETGVAPEKIFLVEKGDVISYNGKDMILNEKVQSGNILID
3D structure
PDB6k6w Structure of RNase J1 from Staphylococcus epidermidis
ChainD
Resolution2.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN D H76 H78 H80 H144 E166 H74 H76 H78 H142 E164
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0004534 5'-3' RNA exonuclease activity
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
GO:0006396 RNA processing
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6k6w, PDBe:6k6w, PDBj:6k6w
PDBsum6k6w
PubMed
UniProtQ8CST0|RNJ2_STAES Ribonuclease J 2 (Gene Name=rnj2)

[Back to BioLiP]