Structure of PDB 6jil Chain D

Receptor sequence
>6jilD (length=298) Species: 1914 (Streptomyces lavendulae) [Search protein sequence]
MGILALVTDAVSLPIDYDMPPLLEACRTVGITAEVCDWEDGTVDWSRFEA
VVFRSPWTWAERQAEFLAFCERVSHVTRLITPMPLVRWALDKRYLADLAA
HGVPVIPTTVVAPGSDALAAVRDFLAARPEAREFVVKPTDGCYSKDVQRY
QRSLAEPASRHVARLLANGSHVILQPYVESVDRHGETDLTFFDGVYSHAI
HKGAMLMPDGTVHVPTLDFRQARDADEDQRAVAAAALAASVAHLGLDLPL
VCGRVDLVRGADGSPMVLEMELCEPSLNLTFSEDGALRFAQALAERLK
3D structure
PDB6jil Cyclization mechanism catalyzed by an ATP-grasp enzyme essential for d-cycloserine biosynthesis.
ChainD
Resolution2.32 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.3.3.5: O-ureido-D-serine cyclo-ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D K92 V135 K137 C142 Y143 S144 Q175 Y177 V178 E186 M205 L206 E269 K92 V135 K137 C142 Y143 S144 Q175 Y177 V178 E186 M205 L206 E269
BS02 MG D C142 E269 E271 C142 E269 E271
BS03 MG D W57 E271 E274 W57 E271 E274
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0016882 cyclo-ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0017000 antibiotic biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6jil, PDBe:6jil, PDBj:6jil
PDBsum6jil
PubMed31793174
UniProtD2Z030|DCSG_STRLA Cycloserine biosynthesis protein DcsG (Gene Name=dcsG)

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